ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 38.00 0.09 0.10 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 194.00 1.74 0.50 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 1293.00 1.16 3.33 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 799.00 3.62 2.06 65.33 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 10960.00 5.98 28.26 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 44.00 2.52 0.11 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 3665.00 5.20 9.45 96.93 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 1935.00 2.75 4.99 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 5373.00 7.63 13.86 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 77743.00 44.26 200.49 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 22533.00 4.72 58.11 84.31 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 23049.00 4.83 59.44 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 85755.00 17.96 221.15 89.46 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 3490.00 0.73 9.00 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 10597.00 2.22 27.33 34.83 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 13809.00 2.89 35.61 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 5027.00 1.05 12.96 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 63.00 13.32 0.16 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 28658.00 7.12 73.91 96.84 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 67.00 0.67 0.17 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 1106.00 11.10 2.85 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 1676.00 7.75 4.32 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 21825.00 10.16 56.28 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 101395.00 25.19 261.48 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 35631.00 8.85 91.89 65.02 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA GM12878 (Cell line)