ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000760093.1 ENST00000760093.1_77_108_+ 77–108 55.00 0.16 0.14 100.0 ENST00000760093 lncRNA GM12878 (Cell line)
ENST00000760397.1 ENST00000760397.1_331_421_+ 331–421 62.00 17.32 0.16 92.54 SNHG14-356 lncRNA GM12878 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 7811.00 5.94 20.14 91.97 LINC02806-241 lncRNA GM12878 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 2364.00 1.80 6.10 100.0 LINC02806-241 lncRNA GM12878 (Cell line)
ENST00000762395.1 ENST00000762395.1_397_430_+ 397–430 197.00 0.15 0.51 100.0 LINC02806-241 lncRNA GM12878 (Cell line)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 5711.00 4.35 14.73 55.63 LINC02806-241 lncRNA GM12878 (Cell line)
ENST00000762395.1 ENST00000762395.1_307_324_+ 307–324 46386.00 35.30 119.62 100.0 LINC02806-241 lncRNA GM12878 (Cell line)
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 51159.00 97.44 131.93 100.0 EHBP1-AS1-210 lncRNA GM12878 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 6798.00 13.34 17.53 100.0 ENST00000770398 lncRNA GM12878 (Cell line)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 27066.00 53.10 69.80 100.0 ENST00000770398 lncRNA GM12878 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 148.00 0.29 0.38 100.0 ENST00000770398 lncRNA GM12878 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 10750.00 7.03 27.72 100.0 ENST00000771298 lncRNA GM12878 (Cell line)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 404.00 0.26 1.04 100.0 ENST00000771298 lncRNA GM12878 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 22662.00 14.83 58.44 55.13 ENST00000771298 lncRNA GM12878 (Cell line)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 3585.00 2.35 9.25 100.0 ENST00000771298 lncRNA GM12878 (Cell line)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 2843.00 16.66 7.33 100.0 ENST00000772672 lncRNA GM12878 (Cell line)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 8.00 0.05 0.02 100.0 ENST00000772672 lncRNA GM12878 (Cell line)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 8989.00 52.67 23.18 100.0 ENST00000772672 lncRNA GM12878 (Cell line)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 3597.00 54.85 9.28 100.0 ENST00000773843 lncRNA GM12878 (Cell line)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 141.00 0.01 0.36 100.0 SNHG12-223 lncRNA GM12878 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 292991.00 30.12 755.58 86.08 SNHG12-223 lncRNA GM12878 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 669996.00 68.87 1727.83 98.41 SNHG12-223 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 3978.00 0.26 10.26 100.0 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 1426871.00 92.44 3679.71 94.44 SNHG25-206 lncRNA GM12878 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 162.00 0.01 0.42 100.0 SNHG25-206 lncRNA GM12878 (Cell line)