ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_56_95_+ 56–95 331.70 0.21 0.86 53.85 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 230.00 0.14 0.59 83.03 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 289.00 0.18 0.75 100.0 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 593.00 0.37 1.53 98.67 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 268.00 0.17 0.69 89.93 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 1259.00 0.79 3.25 64.6 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 349.00 0.22 0.90 100.0 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 590.00 0.37 1.52 86.51 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 54.00 0.03 0.14 26.6 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 696.00 0.44 1.79 100.0 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 132.35 0.08 0.34 58.31 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_12_95_+ 12–95 235.00 0.15 0.61 79.66 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 2625.00 1.64 6.77 99.7 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_58_95_+ 58–95 181.47 0.11 0.47 49.18 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 1514.00 0.95 3.90 91.76 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 182.56 0.11 0.47 67.87 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 386.00 0.24 1.00 64.33 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_79_95_+ 79–95 92.00 0.06 0.24 40.35 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_20_95_+ 20–95 214.00 0.13 0.55 57.22 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 38563.00 41.91 99.45 100.0 Y_RNA.14-201 misc RNA GM12878 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 489.00 12.45 1.26 100.0 RNU5E-1-201 snRNA GM12878 (Cell line)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 30.00 0.04 0.08 10.07 RNA5SP370-201 rRNA pseudogene GM12878 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 804.00 54.58 2.07 100.0 SNORA31-201 snoRNA GM12878 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 2158.00 3.15 5.57 86.39 RNA5SP389-201 rRNA pseudogene GM12878 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 6134.00 8.95 15.82 100.0 RNA5SP389-201 rRNA pseudogene GM12878 (Cell line)