ENCFF001REE

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 69.00 0.03 0.18 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 220.00 0.10 0.57 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 37.00 0.02 0.10 100.0 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 6050.76 2.77 15.60 36.04 U2.3-201 snRNA GM12878 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 3082.63 1.41 7.95 45.01 U2.3-201 snRNA GM12878 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 237.00 0.13 0.61 100.0 U2.6-201 snRNA GM12878 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 4636.00 2.68 11.96 71.64 ENST00000619323 lncRNA GM12878 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 163176.00 94.35 420.81 98.31 ENST00000619323 lncRNA GM12878 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 224.00 21.66 0.58 100.0 SCARNA4-202 scaRNA GM12878 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 324.00 6.63 0.84 100.0 ENST00000625572 miRNA GM12878 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 215.00 5.28 0.55 100.0 ENST00000628177 snoRNA GM12878 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 242114.00 91.39 624.38 100.0 ENST00000630615 snoRNA GM12878 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 17025.00 39.48 43.91 100.0 DMRT2-209 protein coding GM12878 (Cell line)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 10436.00 24.20 26.91 100.0 DMRT2-209 protein coding GM12878 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 2237.00 42.63 5.77 100.0 SNORD98-201 snoRNA GM12878 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 1801.00 34.32 4.64 100.0 SNORD98-201 snoRNA GM12878 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 483094.87 32.40 1245.84 37.53 MIR106AHG-201 lncRNA GM12878 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 868.96 0.06 2.24 50.76 MIR106AHG-201 lncRNA GM12878 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 170.00 0.01 0.44 100.0 MIR106AHG-201 lncRNA GM12878 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 1047.10 0.07 2.70 61.16 MIR106AHG-201 lncRNA GM12878 (Cell line)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 1.00 2.78 0.00 100.0 MEG8-222 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 132.00 7.39 0.34 100.0 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 18.00 1.01 0.05 100.0 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 1.00 0.06 0.00 100.0 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 11.00 0.62 0.03 100.0 SNHG14-224 lncRNA GM12878 (Cell line)