ENCFF000KIC

Library Details

Organism: Homo Sapiens
Biosample: SK-N-SH (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CSJ
Description: Part of ENCODE experiment ENCSR000CSJ. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, SK-N-SH. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 30.96 41.83 8.25 75.5 RNU5A-1-201 snRNA SK-N-SH (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 3.31 4.47 0.88 8.06 RNU5A-1-201 snRNA SK-N-SH (Cell line)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 77.00 27.70 20.52 100.0 SNORD12B-201 snoRNA SK-N-SH (Cell line)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 127.00 45.68 33.84 100.0 SNORD12B-201 snoRNA SK-N-SH (Cell line)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 8682.00 95.60 2313.58 100.0 SNHG3-202 retained intron SK-N-SH (Cell line)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 608.00 71.45 162.02 100.0 SNORD124-201 snoRNA SK-N-SH (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 3939.00 90.97 1049.67 100.0 RPL13A-212 retained intron SK-N-SH (Cell line)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 2.00 0.05 0.53 100.0 RPL13A-212 retained intron SK-N-SH (Cell line)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 3244.00 52.06 864.46 100.0 RPL7A-207 protein coding CDS not defined SK-N-SH (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 2310.00 37.07 615.57 100.0 RPL7A-207 protein coding CDS not defined SK-N-SH (Cell line)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 60.00 11.88 15.99 100.0 RABGGTB-213 protein coding CDS not defined SK-N-SH (Cell line)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 238.00 47.13 63.42 100.0 RABGGTB-213 protein coding CDS not defined SK-N-SH (Cell line)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 4029.00 98.60 1073.65 100.0 RPL5-205 retained intron SK-N-SH (Cell line)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 7776.00 81.47 2072.15 100.0 RACK1-230 retained intron SK-N-SH (Cell line)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 66.00 12.02 17.59 100.0 SNHG6-204 retained intron SK-N-SH (Cell line)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 376.00 68.49 100.20 100.0 SNHG6-204 retained intron SK-N-SH (Cell line)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 11093.00 89.89 2956.07 100.0 RPS13-208 retained intron SK-N-SH (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 180.00 92.31 47.97 100.0 HSPA8-215 retained intron SK-N-SH (Cell line)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 75.00 43.86 19.99 100.0 RPL4-214 retained intron SK-N-SH (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 302.00 27.21 80.48 100.0 ENST00000570843 lncRNA SK-N-SH (Cell line)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 68.00 6.13 18.12 100.0 ENST00000570843 lncRNA SK-N-SH (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 48.00 20.34 12.79 100.0 C19orf48P-203 retained intron SK-N-SH (Cell line)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1110.00 77.51 295.79 100.0 NOP56-219 retained intron SK-N-SH (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 1.00 0.10 0.27 100.0 U2.3-201 snRNA SK-N-SH (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 33.00 3.34 8.79 80.49 U2.3-201 snRNA SK-N-SH (Cell line)