ENCFF000KIC

Library Details

Organism: Homo Sapiens
Biosample: SK-N-SH (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CSJ
Description: Part of ENCODE experiment ENCSR000CSJ. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, SK-N-SH. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 16.52 1.67 4.40 86.92 U2.3-201 snRNA SK-N-SH (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 0.78 0.08 0.21 5.97 U2.3-201 snRNA SK-N-SH (Cell line)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 20.00 0.49 5.33 100.0 GAS5-230 retained intron SK-N-SH (Cell line)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 1008.00 24.74 268.61 94.12 GAS5-230 retained intron SK-N-SH (Cell line)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 2.00 0.05 0.53 100.0 GAS5-230 retained intron SK-N-SH (Cell line)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 1434.00 35.19 382.13 79.23 GAS5-230 retained intron SK-N-SH (Cell line)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 2984.00 74.49 795.18 100.0 ENST00000651540 lncRNA SK-N-SH (Cell line)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 1091.00 16.16 290.73 99.91 SNHG29-232 lncRNA SK-N-SH (Cell line)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 4767.00 70.62 1270.31 89.04 SNHG29-232 lncRNA SK-N-SH (Cell line)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 32.00 0.47 8.53 100.0 SNHG29-232 lncRNA SK-N-SH (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 262.00 25.46 69.82 100.0 SNHG1-248 lncRNA SK-N-SH (Cell line)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 289.00 28.09 77.01 100.0 SNHG1-248 lncRNA SK-N-SH (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 241.00 23.42 64.22 100.0 SNHG1-248 lncRNA SK-N-SH (Cell line)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1585.00 12.68 422.37 100.0 SNHG5-273 lncRNA SK-N-SH (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 5012.00 40.10 1335.60 87.79 SNHG5-273 lncRNA SK-N-SH (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 3741.00 29.93 996.90 90.96 SNHG5-273 lncRNA SK-N-SH (Cell line)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 1.00 100.00 0.27 100.0 SNHG14-336 lncRNA SK-N-SH (Cell line)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 118.00 100.00 31.44 100.0 NCL-216 retained intron SK-N-SH (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 80.18 43.82 21.37 73.56 SNHG19-202 lncRNA SK-N-SH (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 17.29 9.45 4.61 16.31 SNHG19-202 lncRNA SK-N-SH (Cell line)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 860.00 73.69 229.17 100.0 ENST00000722183 lncRNA SK-N-SH (Cell line)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 2.00 66.67 0.53 100.0 ENST00000747512 lncRNA SK-N-SH (Cell line)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 308.00 92.22 82.08 100.0 ENST00000772672 lncRNA SK-N-SH (Cell line)