ENCFF000KHC
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | SK-N-SH (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR000CSJ |
| Description: | Part of ENCODE experiment ENCSR000CSJ. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, SK-N-SH. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000686899.3 | ENST00000686899.3_562_648_+ | 562–648 | 82.05 | 18.48 | 27.54 | 36.96 | SNHG19-202 | lncRNA | SK-N-SH (Cell line) |
| ENST00000686899.3 | ENST00000686899.3_562_650_+ | 562–650 | 109.51 | 24.66 | 36.75 | 52.9 | SNHG19-202 | lncRNA | SK-N-SH (Cell line) |
| ENST00000693179.2 | ENST00000693179.2_532_619_+ | 532–619 | 25.00 | 43.10 | 8.39 | 100.0 | SNHG8-214 | lncRNA | SK-N-SH (Cell line) |
| ENST00000722183.1 | ENST00000722183.1_108_192_+ | 108–192 | 831.00 | 74.00 | 278.88 | 100.0 | ENST00000722183 | lncRNA | SK-N-SH (Cell line) |
| ENST00000747512.1 | ENST00000747512.1_63_156_+ | 63–156 | 3.00 | 100.00 | 1.01 | 100.0 | ENST00000747512 | lncRNA | SK-N-SH (Cell line) |
| ENST00000772672.1 | ENST00000772672.1_21_113_+ | 21–113 | 1485.00 | 86.84 | 498.35 | 100.0 | ENST00000772672 | lncRNA | SK-N-SH (Cell line) |
| ENST00000828033.1 | ENST00000828033.1_252_318_+ | 252–318 | 1.00 | 2.78 | 0.34 | 100.0 | GAS5-377 | lncRNA | SK-N-SH (Cell line) |