ENCFF000KFJ

Library Details

Organism: Homo Sapiens
Biosample: skeletal muscle satellite cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUZ
Description: Part of ENCODE experiment ENCSR000CUZ. The libraries contained in this experiment come from skeletal muscle myosatellite cells isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 11.64 0.13 0.76 68.5 U2.3-201 snRNA skeletal muscle satellite cell (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 14.00 6.17 0.91 100.0 SNHG14-224 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 4266.00 0.85 277.91 100.0 GAS5-230 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 178191.00 35.52 11608.52 92.25 GAS5-230 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 751.00 0.15 48.93 100.0 GAS5-230 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 148938.00 29.69 9702.79 68.64 GAS5-230 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 2519.00 72.26 164.10 100.0 ENST00000651540 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 13842.00 3.40 901.76 99.46 SNHG29-232 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 352138.00 86.51 22940.56 92.08 SNHG29-232 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1535.00 0.38 100.00 100.0 SNHG29-232 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 810.00 0.20 52.77 100.0 SNHG29-232 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 2160.00 15.89 140.72 100.0 SNHG1-248 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 1203.00 8.85 78.37 100.0 SNHG1-248 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 4806.00 35.36 313.09 100.0 SNHG1-248 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 810.00 5.19 52.77 100.0 SNHG5-273 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 3750.00 24.05 244.30 45.82 SNHG5-273 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 4433.00 28.43 288.79 79.82 SNHG5-273 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 666.00 84.52 43.39 100.0 SNHG14-336 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 2083.00 49.55 135.70 100.0 NCL-216 retained intron skeletal muscle satellite cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 5190.49 50.38 338.14 69.3 SNHG19-202 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2162.14 20.99 140.86 36.62 SNHG19-202 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1325.00 38.24 86.32 100.0 SNHG8-214 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 854.00 68.70 55.64 100.0 ENST00000722183 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 3.00 60.00 0.20 100.0 ENST00000747512 lncRNA skeletal muscle satellite cell (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 2.00 0.03 0.13 100.0 ENST00000772672 lncRNA skeletal muscle satellite cell (Primary cell)