ENCFF000KEJ

Library Details

Organism: Homo Sapiens
Biosample: melanocyte of skin (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVM
Description: Part of ENCODE experiment ENCSR000CVM. RNA-seq on skin melanocytes primary whole cells (NHEM-M2) from rRNA-depleted Total RNA less than 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 1287.00 4.24 112.33 100.0 SNHG6-204 retained intron melanocyte of skin (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 27321.00 89.98 2384.63 100.0 SNHG6-204 retained intron melanocyte of skin (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 16.00 2.82 1.40 69.57 WDR74-204 protein coding melanocyte of skin (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 815.00 54.30 71.13 67.19 HSPA8-211 retained intron melanocyte of skin (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 759.00 81.53 66.25 100.0 RPS13-208 retained intron melanocyte of skin (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 3204.00 87.14 279.65 100.0 HSPA8-215 retained intron melanocyte of skin (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1937.00 75.96 169.07 100.0 RPL4-214 retained intron melanocyte of skin (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 405.00 12.20 35.35 100.0 ENST00000570843 lncRNA melanocyte of skin (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 2196.00 66.14 191.67 100.0 ENST00000570843 lncRNA melanocyte of skin (Primary cell)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 1.00 0.15 0.09 100.0 SNORD3C-201 snoRNA melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1.90 0.16 0.17 63.44 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 844.00 72.63 73.67 100.0 C19orf48P-203 retained intron melanocyte of skin (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 50.00 12.02 4.36 100.0 RPS11-206 retained intron melanocyte of skin (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 10.00 1.64 0.87 100.0 ENST00000602478 lncRNA melanocyte of skin (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 479.00 43.19 41.81 100.0 NOP56-219 retained intron melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 41.37 0.59 3.61 35.36 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 1.00 0.01 0.09 100.0 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 3581.00 51.29 312.56 100.0 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 10.00 0.14 0.87 55.56 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 1.00 0.01 0.09 100.0 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 73.69 1.06 6.43 62.99 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 3.11 0.04 0.27 62.1 U2.3-201 snRNA melanocyte of skin (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 46.00 11.25 4.01 100.0 SNHG14-224 lncRNA melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 587.00 0.21 51.23 100.0 GAS5-230 retained intron melanocyte of skin (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 112969.00 40.01 9860.17 94.46 GAS5-230 retained intron melanocyte of skin (Primary cell)