ENCFF000KCV

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of dermis (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUY
Description: Part of ENCODE experiment ENCSR000CUY. The libraries contained in this experiment come from skin fibroblasts primary whole cells, NHDF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 23874.00 9.18 3048.70 97.55 SNHG29-232 lncRNA fibroblast of dermis (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 207028.00 79.60 26437.35 91.61 SNHG29-232 lncRNA fibroblast of dermis (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 838.00 0.32 107.01 100.0 SNHG29-232 lncRNA fibroblast of dermis (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1458.00 0.56 186.19 100.0 SNHG29-232 lncRNA fibroblast of dermis (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 1.00 1.43 0.13 100.0 SNHG14-234 lncRNA fibroblast of dermis (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1565.00 11.39 199.85 100.0 SNHG1-248 lncRNA fibroblast of dermis (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 1540.00 11.21 196.66 100.0 SNHG1-248 lncRNA fibroblast of dermis (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 5958.00 43.36 760.83 100.0 SNHG1-248 lncRNA fibroblast of dermis (Primary cell)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 2.00 0.80 0.26 100.0 SNHG14-315 lncRNA fibroblast of dermis (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 296.00 2.90 37.80 100.0 SNHG5-273 lncRNA fibroblast of dermis (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 3005.00 29.39 383.74 75.33 SNHG5-273 lncRNA fibroblast of dermis (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 4577.00 44.77 584.48 87.5 SNHG5-273 lncRNA fibroblast of dermis (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 285.00 82.13 36.39 100.0 SNHG14-336 lncRNA fibroblast of dermis (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 783.00 68.87 99.99 100.0 NCL-216 retained intron fibroblast of dermis (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 5048.77 51.50 644.72 73.26 SNHG19-202 lncRNA fibroblast of dermis (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1914.30 19.53 244.45 34.62 SNHG19-202 lncRNA fibroblast of dermis (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 507.00 41.25 64.74 100.0 SNHG8-214 lncRNA fibroblast of dermis (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 595.00 59.50 75.98 100.0 ENST00000722183 lncRNA fibroblast of dermis (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 2.00 66.67 0.26 100.0 ENST00000747512 lncRNA fibroblast of dermis (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 5.00 0.04 0.64 100.0 ENST00000772672 lncRNA fibroblast of dermis (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 12344.00 92.78 1576.32 100.0 ENST00000772672 lncRNA fibroblast of dermis (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 1.00 4.17 0.13 100.0 ENST00000788343 lncRNA fibroblast of dermis (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 24.00 2.36 3.06 11.88 ENST00000823279 lncRNA fibroblast of dermis (Primary cell)