ENCFF000KCE

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of dermis (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUY
Description: Part of ENCODE experiment ENCSR000CUY. The libraries contained in this experiment come from skin fibroblasts primary whole cells, NHDF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 734.00 0.17 51.06 100.0 GAS5-230 retained intron fibroblast of dermis (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 118736.00 27.67 8260.53 74.55 GAS5-230 retained intron fibroblast of dermis (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 1.00 0.04 0.07 100.0 ENST00000651540 lncRNA fibroblast of dermis (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1644.00 71.51 114.37 100.0 ENST00000651540 lncRNA fibroblast of dermis (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 22661.00 6.48 1576.54 99.5 SNHG29-232 lncRNA fibroblast of dermis (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 290049.00 82.98 20178.87 91.38 SNHG29-232 lncRNA fibroblast of dermis (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1385.00 0.40 96.36 100.0 SNHG29-232 lncRNA fibroblast of dermis (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 636.00 0.18 44.25 100.0 SNHG29-232 lncRNA fibroblast of dermis (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 2.00 2.33 0.14 100.0 SNHG14-234 lncRNA fibroblast of dermis (Primary cell)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 1.00 1.16 0.07 100.0 SNHG14-234 lncRNA fibroblast of dermis (Primary cell)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 1.00 100.00 0.07 100.0 SNHG14-288 lncRNA fibroblast of dermis (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 2101.00 8.95 146.17 100.0 SNHG1-248 lncRNA fibroblast of dermis (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 2047.00 8.72 142.41 100.0 SNHG1-248 lncRNA fibroblast of dermis (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 13031.00 55.53 906.57 100.0 SNHG1-248 lncRNA fibroblast of dermis (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 510.00 2.20 35.48 100.0 SNHG5-273 lncRNA fibroblast of dermis (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 7335.00 31.66 510.30 72.65 SNHG5-273 lncRNA fibroblast of dermis (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 9770.00 42.16 679.70 83.63 SNHG5-273 lncRNA fibroblast of dermis (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 465.00 82.89 32.35 100.0 SNHG14-336 lncRNA fibroblast of dermis (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1341.00 66.35 93.29 100.0 NCL-216 retained intron fibroblast of dermis (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 4657.18 50.54 324.00 70.82 SNHG19-202 lncRNA fibroblast of dermis (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2025.25 21.98 140.90 38.0 SNHG19-202 lncRNA fibroblast of dermis (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1067.00 40.77 74.23 100.0 SNHG8-214 lncRNA fibroblast of dermis (Primary cell)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 1.00 1.27 0.07 100.0 SNHG32-223 lncRNA fibroblast of dermis (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 557.00 59.38 38.75 100.0 ENST00000722183 lncRNA fibroblast of dermis (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 13758.00 93.57 957.15 100.0 ENST00000772672 lncRNA fibroblast of dermis (Primary cell)