ENCFF000JQC

Library Details

Organism: Homo Sapiens
Biosample: IMR-90 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CSE
Description: Part of ENCODE experiment ENCSR000CSE. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, IMR-90. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 1.00 0.12 1.71 100.0 U2.3-201 snRNA IMR-90 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 30.00 3.72 51.45 100.0 U2.3-201 snRNA IMR-90 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 8.00 0.99 13.72 47.06 U2.3-201 snRNA IMR-90 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 6.08 0.75 10.43 86.92 U2.3-201 snRNA IMR-90 (Cell line)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 26.00 1.05 44.59 100.0 GAS5-230 retained intron IMR-90 (Cell line)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 266.00 10.73 456.16 96.03 GAS5-230 retained intron IMR-90 (Cell line)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 13.00 0.52 22.29 100.0 GAS5-230 retained intron IMR-90 (Cell line)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 1203.00 48.53 2063.02 84.84 GAS5-230 retained intron IMR-90 (Cell line)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1800.00 73.95 3086.81 100.0 ENST00000651540 lncRNA IMR-90 (Cell line)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 1502.00 37.89 2575.77 99.08 SNHG29-232 lncRNA IMR-90 (Cell line)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 1981.00 49.97 3397.20 94.06 SNHG29-232 lncRNA IMR-90 (Cell line)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 42.00 1.06 72.03 100.0 SNHG29-232 lncRNA IMR-90 (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 88.00 29.73 150.91 100.0 SNHG1-248 lncRNA IMR-90 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 121.00 40.88 207.50 100.0 SNHG1-248 lncRNA IMR-90 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 29.00 9.80 49.73 100.0 SNHG1-248 lncRNA IMR-90 (Cell line)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1345.00 65.48 2306.53 100.0 SNHG5-273 lncRNA IMR-90 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 354.00 17.23 607.07 92.19 SNHG5-273 lncRNA IMR-90 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 82.00 3.99 140.62 91.11 SNHG5-273 lncRNA IMR-90 (Cell line)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 40.00 72.73 68.60 100.0 NCL-216 retained intron IMR-90 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 21.44 18.17 36.77 25.53 SNHG19-202 lncRNA IMR-90 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 57.64 48.85 98.85 70.29 SNHG19-202 lncRNA IMR-90 (Cell line)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1.00 10.00 1.71 100.0 SNHG8-214 lncRNA IMR-90 (Cell line)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 514.00 87.71 881.45 100.0 ENST00000722183 lncRNA IMR-90 (Cell line)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 1.00 50.00 1.71 100.0 ENST00000747512 lncRNA IMR-90 (Cell line)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 66.00 81.48 113.18 100.0 ENST00000772672 lncRNA IMR-90 (Cell line)