ENCFF000JQC

Library Details

Organism: Homo Sapiens
Biosample: IMR-90 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CSE
Description: Part of ENCODE experiment ENCSR000CSE. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, IMR-90. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 11.00 4.78 18.86 27.5 RNU5A-1-201 snRNA IMR-90 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 55.87 24.29 95.81 60.73 RNU5A-1-201 snRNA IMR-90 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 24.80 10.78 42.53 32.21 RNU5A-1-201 snRNA IMR-90 (Cell line)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 52.00 68.42 89.17 100.0 SNORD12B-201 snoRNA IMR-90 (Cell line)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 14.00 18.42 24.01 100.0 SNORD12B-201 snoRNA IMR-90 (Cell line)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 3394.00 94.88 5820.34 100.0 SNHG3-202 retained intron IMR-90 (Cell line)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 266.00 67.00 456.16 100.0 SNORD124-201 snoRNA IMR-90 (Cell line)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 17.00 80.95 29.15 80.95 RPL3-212 retained intron IMR-90 (Cell line)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 2.00 0.07 3.43 100.0 RPL13A-212 retained intron IMR-90 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 2773.00 93.59 4755.40 100.0 RPL13A-212 retained intron IMR-90 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 470.00 51.99 806.00 100.0 RPL7A-207 protein coding CDS not defined IMR-90 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 281.00 31.08 481.88 100.0 RPL7A-207 protein coding CDS not defined IMR-90 (Cell line)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 34.00 22.08 58.31 100.0 RABGGTB-213 protein coding CDS not defined IMR-90 (Cell line)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 29.00 18.83 49.73 100.0 RABGGTB-213 protein coding CDS not defined IMR-90 (Cell line)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 2605.00 97.97 4467.29 99.39 RPL5-205 retained intron IMR-90 (Cell line)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 3565.00 88.55 6113.59 100.0 RACK1-230 retained intron IMR-90 (Cell line)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 19.00 23.46 32.58 100.0 SNHG6-204 retained intron IMR-90 (Cell line)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 44.00 54.32 75.46 100.0 SNHG6-204 retained intron IMR-90 (Cell line)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 6369.00 92.94 10922.15 100.0 RPS13-208 retained intron IMR-90 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 35.00 81.40 60.02 100.0 HSPA8-215 retained intron IMR-90 (Cell line)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1.00 7.69 1.71 100.0 RPL4-214 retained intron IMR-90 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 340.00 32.91 583.06 100.0 ENST00000570843 lncRNA IMR-90 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 52.00 5.03 89.17 100.0 ENST00000570843 lncRNA IMR-90 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 12.00 12.24 20.58 100.0 C19orf48P-203 retained intron IMR-90 (Cell line)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 2131.00 78.00 3654.44 100.0 NOP56-219 retained intron IMR-90 (Cell line)