ENCFF000JOR

Library Details

Organism: Homo Sapiens
Biosample: subcutaneous preadipocyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVJ
Description: Part of ENCODE experiment ENCSR000CVJ. The libraries contained in this experiment come from subcutaneous white pre-adipocyte primary whole cells, HWP isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1931.00 17.03 32.78 100.0 RABGGTB-213 protein coding CDS not defined subcutaneous preadipocyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 4845.00 42.72 82.25 100.0 RABGGTB-213 protein coding CDS not defined subcutaneous preadipocyte (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 648005.00 98.62 11001.06 99.49 RPL5-205 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 85.00 0.01 1.44 100.0 RPL5-205 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 55.00 1.86 0.93 100.0 RACK1-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 4245.00 3.25 72.07 100.0 SNHG6-204 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 118879.00 90.98 2018.19 100.0 SNHG6-204 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 6.00 0.48 0.10 50.0 WDR74-204 protein coding subcutaneous preadipocyte (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 5754.00 58.49 97.68 73.95 HSPA8-211 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 3011.00 81.55 51.12 100.0 RPS13-208 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 7181.00 90.28 121.91 100.0 HSPA8-215 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1.00 0.02 0.02 100.0 RPS2-215 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 3743.00 74.41 63.54 100.0 RPL4-214 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 669.00 15.70 11.36 100.0 ENST00000570843 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 2610.00 61.27 44.31 100.0 ENST00000570843 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1.73 0.04 0.03 86.48 C19orf48P-203 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 3140.00 72.63 53.31 100.0 C19orf48P-203 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 144.00 9.95 2.44 100.0 RPS11-206 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 14.00 0.34 0.24 100.0 ENST00000602478 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1303.00 33.80 22.12 100.0 NOP56-219 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1.00 0.01 0.02 100.0 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 33.39 0.25 0.57 30.08 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 1.00 0.01 0.02 100.0 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 6628.00 50.21 112.52 100.0 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 9.00 0.07 0.15 23.08 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)