ENCFF000JNK

Library Details

Organism: Homo Sapiens
Biosample: vein endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVI
Description: Part of ENCODE experiment ENCSR000CVI. The libraries contained in this experiment come from saphenous vein endothelial primary whole cells, HSaVEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 70.22 18.53 1.99 58.52 RNU5A-1-201 snRNA vein endothelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 32.00 8.44 0.91 78.05 RNU5A-1-201 snRNA vein endothelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 50.43 13.31 1.43 49.93 RNU5A-1-201 snRNA vein endothelial cell (Primary cell)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 1.00 100.00 0.03 100.0 SNORD38A-201 snoRNA vein endothelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 10.00 0.71 0.28 100.0 7SK.1-201 misc RNA vein endothelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 388.00 27.38 11.01 100.0 7SK.1-201 misc RNA vein endothelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 15.00 0.62 0.43 100.0 SNORD83A-201 snoRNA vein endothelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 2.00 0.08 0.06 100.0 SNORD83A-201 snoRNA vein endothelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 6008.00 60.15 170.55 100.0 SNORD12B-201 snoRNA vein endothelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1829.00 18.31 51.92 100.0 SNORD12B-201 snoRNA vein endothelial cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 29786.00 91.23 845.52 100.0 SNHG3-202 retained intron vein endothelial cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 6556.00 74.71 186.10 100.0 SNORD124-201 snoRNA vein endothelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 9.00 0.05 0.26 100.0 RPL3-212 retained intron vein endothelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 14374.00 76.53 408.03 88.14 RPL3-212 retained intron vein endothelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 1243.00 4.33 35.28 100.0 RPL13A-212 retained intron vein endothelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 22804.00 79.37 647.33 100.0 RPL13A-212 retained intron vein endothelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 7033.00 25.10 199.64 100.0 RPL7A-207 protein coding CDS not defined vein endothelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 17682.00 63.10 501.93 100.0 RPL7A-207 protein coding CDS not defined vein endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 8188.00 51.01 232.43 100.0 RABGGTB-213 protein coding CDS not defined vein endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1752.00 10.91 49.73 100.0 RABGGTB-213 protein coding CDS not defined vein endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 6.00 0.04 0.17 100.0 RABGGTB-213 protein coding CDS not defined vein endothelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 377891.00 98.84 10727.00 99.57 RPL5-205 retained intron vein endothelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 14.00 0.00 0.40 100.0 RPL5-205 retained intron vein endothelial cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 51.00 2.07 1.45 100.0 RACK1-230 retained intron vein endothelial cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 2987.00 4.65 84.79 100.0 SNHG6-204 retained intron vein endothelial cell (Primary cell)