ENCFF000JNF

Library Details

Organism: Homo Sapiens
Biosample: vein endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVI
Description: Part of ENCODE experiment ENCSR000CVI. The libraries contained in this experiment come from saphenous vein endothelial primary whole cells, HSaVEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1.00 0.00 0.03 100.0 GAS5-230 retained intron vein endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 2570.00 0.25 75.44 100.0 GAS5-230 retained intron vein endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 391019.00 37.94 11478.48 70.0 GAS5-230 retained intron vein endothelial cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 4381.00 75.16 128.61 100.0 ENST00000651540 lncRNA vein endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 142006.00 12.57 4168.63 96.72 SNHG29-232 lncRNA vein endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 932895.00 82.57 27385.41 97.61 SNHG29-232 lncRNA vein endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 3959.00 0.35 116.22 100.0 SNHG29-232 lncRNA vein endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 3.00 0.00 0.09 100.0 SNHG29-232 lncRNA vein endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1323.00 0.12 38.84 100.0 SNHG29-232 lncRNA vein endothelial cell (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 2.00 1.00 0.06 100.0 SNHG14-234 lncRNA vein endothelial cell (Primary cell)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 2.00 1.00 0.06 100.0 SNHG14-234 lncRNA vein endothelial cell (Primary cell)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 3.00 0.39 0.09 100.0 ENST00000655317 lncRNA vein endothelial cell (Primary cell)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 2.00 1.27 0.06 100.0 SNHG14-241 lncRNA vein endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 6367.00 21.66 186.91 100.0 SNHG1-248 lncRNA vein endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 2912.00 9.91 85.48 100.0 SNHG1-248 lncRNA vein endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 9898.00 33.67 290.56 100.0 SNHG1-248 lncRNA vein endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1345.00 3.98 39.48 100.0 SNHG5-273 lncRNA vein endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 10396.00 30.76 305.18 78.42 SNHG5-273 lncRNA vein endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 14258.00 42.18 418.55 90.08 SNHG5-273 lncRNA vein endothelial cell (Primary cell)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 1.00 10.00 0.03 100.0 MEG8-251 lncRNA vein endothelial cell (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 912.00 80.42 26.77 100.0 SNHG14-336 lncRNA vein endothelial cell (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 4352.00 65.59 127.75 100.0 NCL-216 retained intron vein endothelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 10789.36 52.47 316.72 73.12 SNHG19-202 lncRNA vein endothelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 3696.03 17.97 108.50 30.66 SNHG19-202 lncRNA vein endothelial cell (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1623.00 38.32 47.64 100.0 SNHG8-214 lncRNA vein endothelial cell (Primary cell)