ENCFF000JLV

Library Details

Organism: Homo Sapiens
Biosample: placental pericyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVG
Description: Part of ENCODE experiment ENCSR000CVG. The libraries contained in this experiment come from placental pericytes primary whole cells, HPC-PL isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 163.84 17.49 3.46 53.02 RNU5A-1-201 snRNA placental pericyte (Primary cell)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 84.00 8.96 1.77 67.74 RNU5A-1-201 snRNA placental pericyte (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 138.05 14.73 2.92 53.1 RNU5A-1-201 snRNA placental pericyte (Primary cell)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 1.00 25.00 0.02 100.0 SNORD38A-201 snoRNA placental pericyte (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 220.00 32.64 4.65 100.0 7SK.1-201 misc RNA placental pericyte (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 7.00 1.04 0.15 100.0 7SK.1-201 misc RNA placental pericyte (Primary cell)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 1.00 25.00 0.02 100.0 SNORD24-201 snoRNA placental pericyte (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 33.00 1.59 0.70 100.0 SNORD83A-201 snoRNA placental pericyte (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 4.00 0.19 0.08 100.0 SNORD83A-201 snoRNA placental pericyte (Primary cell)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 2.00 100.00 0.04 100.0 SNORD72-201 snoRNA placental pericyte (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1764.00 16.69 37.26 100.0 SNORD12B-201 snoRNA placental pericyte (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 6633.00 62.75 140.12 100.0 SNORD12B-201 snoRNA placental pericyte (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 13839.00 92.44 292.35 100.0 SNHG3-202 retained intron placental pericyte (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 5196.00 72.40 109.77 100.0 SNORD124-201 snoRNA placental pericyte (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 15.00 0.15 0.32 100.0 RPL3-212 retained intron placental pericyte (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 6672.00 65.97 140.95 80.64 RPL3-212 retained intron placental pericyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 26956.00 79.49 569.45 100.0 RPL13A-212 retained intron placental pericyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 1294.00 3.82 27.34 100.0 RPL13A-212 retained intron placental pericyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1.00 0.00 0.02 100.0 RPL13A-212 retained intron placental pericyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 1.00 0.00 0.02 50.0 RPL13A-212 retained intron placental pericyte (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 44849.00 69.92 947.44 100.0 RPL7A-207 protein coding CDS not defined placental pericyte (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 12527.00 19.53 264.63 100.0 RPL7A-207 protein coding CDS not defined placental pericyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 8076.00 47.93 170.61 100.0 RABGGTB-213 protein coding CDS not defined placental pericyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 2437.00 14.46 51.48 100.0 RABGGTB-213 protein coding CDS not defined placental pericyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 30.00 0.18 0.63 96.77 RABGGTB-213 protein coding CDS not defined placental pericyte (Primary cell)