ENCFF000JLH

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of the bone marrow (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVS
Description: Part of ENCODE experiment ENCSR000CVS. The libraries contained in this experiment come from bone marrow derived mesenchymal stem cell primary whole cells, hMSC-BM isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 266.00 8.47 5.99 61.01 RNU5A-1-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 515.69 16.42 11.61 46.84 RNU5A-1-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 4.00 0.13 0.09 100.0 RNU5A-1-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 296.77 9.45 6.68 38.29 RNU5A-1-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 3.00 0.10 0.07 100.0 RNU5B-1-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 1462.00 37.49 32.90 100.0 7SK.1-201 misc RNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 16.00 0.41 0.36 100.0 7SK.1-201 misc RNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 20.00 1.17 0.45 100.0 SNORD83A-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 18.00 1.05 0.41 94.74 SNORD83A-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1748.00 31.55 39.34 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 2618.00 47.25 58.92 100.0 SNORD12B-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 2.00 0.39 0.05 100.0 SNORD62B-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 25947.00 89.89 583.96 100.0 SNHG3-202 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 1.00 8.33 0.02 100.0 SNORD121B-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 6774.00 71.06 152.45 100.0 SNORD124-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 23.00 0.44 0.52 100.0 RPL3-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 3408.00 64.98 76.70 81.57 RPL3-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 29.00 0.05 0.65 93.55 RPL13A-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1.00 0.00 0.02 100.0 RPL13A-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 1939.00 3.41 43.64 100.0 RPL13A-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 33815.00 59.47 761.03 100.0 RPL13A-212 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 16166.00 42.93 363.83 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 16021.00 42.54 360.56 100.0 RPL7A-207 protein coding CDS not defined mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 3.00 0.15 0.07 100.0 RN7SL2-201 misc RNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 16.00 0.18 0.36 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of the bone marrow (Primary cell)