ENCFF000JEC

Library Details

Organism: Homo Sapiens
Biosample: neural cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVR
Description: Part of ENCODE experiment ENCSR000CVR. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, H1-neurons. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 23.00 0.98 1.92 100.0 RABGGTB-213 protein coding CDS not defined neural cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 612.00 26.15 51.20 100.0 RABGGTB-213 protein coding CDS not defined neural cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 736.00 31.45 61.58 100.0 RABGGTB-213 protein coding CDS not defined neural cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 23279.00 97.63 1947.63 99.74 RPL5-205 retained intron neural cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 1.00 0.00 0.08 100.0 RPL5-205 retained intron neural cell (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 1043.00 82.78 87.26 100.0 RACK1-230 retained intron neural cell (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 3235.00 17.45 270.65 100.0 SNHG6-204 retained intron neural cell (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 11901.00 64.19 995.69 100.0 SNHG6-204 retained intron neural cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 494.00 12.45 41.33 67.39 WDR74-204 protein coding neural cell (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 826.00 49.82 69.11 67.32 HSPA8-211 retained intron neural cell (In vitro differentiated cells)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 867.00 87.49 72.54 100.0 RPS13-208 retained intron neural cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 51.00 98.08 4.27 100.0 HSPA8-215 retained intron neural cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 6050.00 69.25 506.17 100.0 RPL4-214 retained intron neural cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 531.00 65.39 44.43 100.0 ENST00000570843 lncRNA neural cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 138.00 17.00 11.55 100.0 ENST00000570843 lncRNA neural cell (In vitro differentiated cells)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 36.00 1.30 3.01 100.0 SNORD3C-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 2.85 0.05 0.24 15.86 C19orf48P-203 retained intron neural cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 0.86 0.02 0.07 14.41 C19orf48P-203 retained intron neural cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 4090.00 77.45 342.19 100.0 C19orf48P-203 retained intron neural cell (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 181.00 4.85 15.14 100.0 RPS11-206 retained intron neural cell (In vitro differentiated cells)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 25.00 3.32 2.09 100.0 ENST00000602478 lncRNA neural cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 842.00 59.42 70.45 100.0 NOP56-219 retained intron neural cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 238.05 7.28 19.92 38.03 U2.3-201 snRNA neural cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 262.00 8.01 21.92 100.0 U2.3-201 snRNA neural cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 31.00 0.95 2.59 100.0 U2.3-201 snRNA neural cell (In vitro differentiated cells)