ENCFF000JKU

Library Details

Organism: Homo Sapiens
Biosample: osteoblast (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUW
Description: Part of ENCODE experiment ENCSR000CUW. The libraries contained in this experiment come from osteoblast primary whole cells, HOB isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 6.00 15.38 1.94 66.67 RNU5A-1-201 snRNA osteoblast (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 6.80 17.42 2.20 48.54 RNU5A-1-201 snRNA osteoblast (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 6.61 16.96 2.14 60.12 RNU5A-1-201 snRNA osteoblast (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 1.00 2.50 0.32 100.0 7SK.1-201 misc RNA osteoblast (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 18.00 45.00 5.82 100.0 7SK.1-201 misc RNA osteoblast (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 388.00 40.50 125.36 100.0 SNORD12B-201 snoRNA osteoblast (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 411.00 42.90 132.80 100.0 SNORD12B-201 snoRNA osteoblast (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 776.00 80.58 250.73 100.0 SNHG3-202 retained intron osteoblast (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 527.00 56.00 170.28 100.0 SNORD124-201 snoRNA osteoblast (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 273.00 54.27 88.21 69.47 RPL3-212 retained intron osteoblast (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 2511.00 79.19 811.31 100.0 RPL13A-212 retained intron osteoblast (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 66.00 2.08 21.32 100.0 RPL13A-212 retained intron osteoblast (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 362.00 15.86 116.96 100.0 RPL7A-207 protein coding CDS not defined osteoblast (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 1338.00 58.61 432.31 100.0 RPL7A-207 protein coding CDS not defined osteoblast (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 205.00 14.09 66.24 100.0 RABGGTB-213 protein coding CDS not defined osteoblast (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 3.00 0.21 0.97 100.0 RABGGTB-213 protein coding CDS not defined osteoblast (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 547.00 37.59 176.74 100.0 RABGGTB-213 protein coding CDS not defined osteoblast (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 16500.00 94.84 5331.21 99.44 RPL5-205 retained intron osteoblast (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 8.00 0.05 2.58 100.0 RPL5-205 retained intron osteoblast (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 17.00 4.05 5.49 100.0 RACK1-230 retained intron osteoblast (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 2229.00 58.70 720.20 100.0 SNHG6-204 retained intron osteoblast (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 827.00 21.78 267.21 100.0 SNHG6-204 retained intron osteoblast (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 92.00 49.20 29.73 66.19 HSPA8-211 retained intron osteoblast (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 148.00 88.62 47.82 100.0 RPS13-208 retained intron osteoblast (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 116.00 73.89 37.48 100.0 HSPA8-215 retained intron osteoblast (Primary cell)