ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 693737.00 37.44 420.89 97.78 SNHG14-315 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 520505.00 28.09 315.79 95.6 SNHG14-315 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 3998.00 0.14 2.43 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 560469.98 19.55 340.04 24.16 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 427.00 0.01 0.26 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 635.00 0.02 0.39 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 2232579.46 77.88 1354.52 81.15 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 7995.00 0.28 4.85 64.4 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 72.00 0.00 0.04 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 5693.00 0.20 3.45 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 3971.00 0.14 2.41 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 38.00 0.00 0.02 79.17 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 45706.00 1.59 27.73 94.45 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 21702.00 20.59 13.17 80.11 SNHG14-323 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 4.00 0.08 0.00 50.0 MEG8-251 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 1518.00 31.55 0.92 72.91 MEG8-251 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 8.00 0.17 0.00 66.67 MEG8-251 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 611.00 12.70 0.37 51.04 MEG8-251 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 364476.00 67.22 221.13 91.73 SNHG14-336 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 152759.00 28.17 92.68 35.68 SNHG14-336 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 431224.00 95.01 261.63 99.11 SNHG14-341 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 548.00 23.81 0.33 100.0 NCL-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1.00 0.06 0.00 100.0 NCL-216 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 2386.00 58.21 1.45 100.0 FMN2-209 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 2.00 0.02 0.00 100.0 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)