ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 10.00 1.27 0.01 90.91 MIR23AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 21.00 2.67 0.01 67.74 MIR23AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 27.00 3.44 0.02 72.97 MIR23AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 306.00 64.29 0.19 100.0 ODAD3-204 nonsense mediated decay neural progenitor cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1.00 0.11 0.00 100.0 VMP1-217 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 8.00 0.91 0.00 100.0 VMP1-217 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 709.00 80.48 0.43 85.32 VMP1-217 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 2208.00 0.07 1.34 100.0 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1089546.99 33.13 661.03 39.67 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1967436.00 59.82 1193.65 64.48 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 194347.00 5.91 117.91 92.77 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 1114.00 0.03 0.68 100.0 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 39.00 0.00 0.02 100.0 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 182.00 72.22 0.11 100.0 ENST00000597420 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 2326.00 43.42 1.41 100.0 RPS11-206 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 2130.00 39.76 1.29 100.0 RPS11-206 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 22.00 66.67 0.01 81.48 CARMN-209 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 7379.00 55.15 4.48 100.0 ENST00000602478 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 93.00 24.54 0.06 100.0 PPFIA1P1-201 processed pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 231.00 44.94 0.14 100.0 SNORD114-21-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 34.00 6.61 0.02 100.0 SNORD114-21-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 198.00 65.56 0.12 100.0 SNORD115-40-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 2.00 25.00 0.00 100.0 MIR98-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 281.00 67.22 0.17 100.0 SNORD113-5-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 9.00 56.25 0.01 100.0 MIR15A-201 miRNA neural progenitor cell (In vitro differentiated cells)