ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 1355.00 0.10 0.82 71.77 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3991.00 0.31 2.42 61.32 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 499486.00 38.35 303.04 79.54 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 194663.00 98.33 118.10 100.0 RPS8-207 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 385.00 5.98 0.23 100.0 RPL7A-206 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 2189.00 33.98 1.33 100.0 RPL7A-206 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 610.00 9.47 0.37 100.0 RPL7A-206 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1383.00 0.13 0.84 100.0 RPL21-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 194.00 0.02 0.12 100.0 RPL21-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 468758.00 45.06 284.40 99.49 RPL21-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 556347.00 53.48 337.54 93.96 RPL21-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 19.00 0.00 0.01 100.0 RPL21-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 17.00 44.74 0.01 100.0 GABRE-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 18.00 0.00 0.01 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 260.00 0.05 0.16 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 1.00 0.00 0.00 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 119205.00 20.87 72.32 94.43 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 389.00 0.07 0.24 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 8926.00 1.56 5.42 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 2086.00 0.37 1.27 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1083.00 0.19 0.66 15.43 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 418824.00 73.32 254.10 99.69 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 53553.00 80.17 32.49 86.61 RPL7A-207 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 659.00 0.99 0.40 100.0 RPL7A-207 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 10.00 0.01 0.01 100.0 RPL7A-207 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)