ENCFF000JKK

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of Wharton's jelly (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVL
Description: Part of ENCODE experiment ENCSR000CVL. The libraries contained in this experiment come from umbilical cord derived mesenchymal stem cell primary whole cells, hMSC-UC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 198846.00 45.16 11925.71 95.5 GAS5-230 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 556.00 0.13 33.35 100.0 GAS5-230 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 131282.00 29.81 7873.58 74.32 GAS5-230 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 2.00 0.03 0.12 100.0 ENST00000651540 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 6109.00 76.65 366.38 100.0 ENST00000651540 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 71020.00 10.54 4259.39 97.25 SNHG29-232 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 566832.00 84.16 33995.51 97.21 SNHG29-232 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 2382.00 0.35 142.86 100.0 SNHG29-232 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1426.00 0.21 85.52 100.0 SNHG29-232 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 4.00 1.33 0.24 100.0 SNHG14-234 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 1.00 3.12 0.06 100.0 SNHG14-261 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 4567.00 27.77 273.90 100.0 SNHG1-248 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 1223.00 7.44 73.35 100.0 SNHG1-248 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 5496.00 33.41 329.62 100.0 SNHG1-248 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1038.00 4.21 62.25 100.0 SNHG5-273 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 6629.00 26.89 397.57 75.89 SNHG5-273 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 11851.00 48.07 710.76 90.67 SNHG5-273 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 1030.00 77.91 61.77 100.0 SNHG14-336 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 2487.00 67.00 149.16 100.0 NCL-216 retained intron mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 5718.21 47.49 342.95 71.91 SNHG19-202 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2270.21 18.86 136.15 34.91 SNHG19-202 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1369.00 43.52 82.11 100.0 SNHG8-214 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 1629.00 68.73 97.70 100.0 ENST00000722183 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 8909.00 84.80 534.31 100.0 ENST00000747512 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 14366.00 89.95 861.59 100.0 ENST00000772672 lncRNA mesenchymal stem cell of Wharton's jelly (Primary cell)