ENCFF853XSN

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR091JNF
Description: Part of ENCODE experiment ENCSR091JNF. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 819287.00 76.29 2475.25 77.82 ENST00000548801 lncRNA Peyer's patch (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 1275.00 17.77 3.85 100.0 ENST00000554988 lncRNA Peyer's patch (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1472.00 20.52 4.45 100.0 ENST00000554988 lncRNA Peyer's patch (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 459.00 1.69 1.39 100.0 SNHG14-220 retained intron Peyer's patch (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 97.00 0.36 0.29 100.0 SNHG14-220 retained intron Peyer's patch (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 44.00 0.16 0.13 100.0 SNHG14-220 retained intron Peyer's patch (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 25391.00 93.47 76.71 100.0 SNHG14-220 retained intron Peyer's patch (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1168.00 99.32 3.53 100.0 TEKT4P2-201 transcribed unprocessed pseudogene Peyer's patch (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 50901.00 84.90 153.78 93.53 RPL4-202 retained intron Peyer's patch (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 333.00 0.56 1.01 100.0 RPL4-202 retained intron Peyer's patch (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 6.00 0.01 0.02 100.0 RPL4-202 retained intron Peyer's patch (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1795.00 2.99 5.42 100.0 RPL4-202 retained intron Peyer's patch (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 715.00 1.19 2.16 100.0 RPL4-202 retained intron Peyer's patch (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 230.00 0.08 0.69 100.0 ENST00000563103 lncRNA Peyer's patch (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 685.00 10.96 2.07 100.0 RPL4-207 retained intron Peyer's patch (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 2871.00 45.94 8.67 100.0 RPL4-207 retained intron Peyer's patch (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 4012.00 1.84 12.12 78.37 ENST00000565336 lncRNA Peyer's patch (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 199139.00 91.53 601.64 98.84 ENST00000565336 lncRNA Peyer's patch (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 4738.00 32.69 14.31 100.0 RBMX-210 retained intron Peyer's patch (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 55.00 0.38 0.17 11.34 RBMX-210 retained intron Peyer's patch (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 3844.00 26.52 11.61 100.0 RBMX-210 retained intron Peyer's patch (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 748.00 33.62 2.26 100.0 RPL4-214 retained intron Peyer's patch (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 187.00 0.75 0.56 100.0 POLG-DT-202 lncRNA Peyer's patch (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 15409.27 62.12 46.55 83.12 POLG-DT-202 lncRNA Peyer's patch (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3535.45 14.25 10.68 19.31 POLG-DT-202 lncRNA Peyer's patch (Tissue)