ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 214.00 0.68 0.91 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 30.00 0.10 0.13 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 10.00 0.03 0.04 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 1259.00 89.54 5.36 100.0 B4GALT1-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 1152.00 9.56 4.91 100.0 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 643.00 5.33 2.74 76.37 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 297.00 2.46 1.26 100.0 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 40418.00 87.29 172.11 90.22 THBS3-AS1-228 lncRNA gastroesophageal sphincter (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 3.00 13.04 0.01 100.0 MIR200CHG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 7.00 30.43 0.03 100.0 MIR200CHG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 565.00 24.84 2.41 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 328.00 14.42 1.40 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 201.00 8.84 0.86 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 157.00 6.90 0.67 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 5.00 71.43 0.02 100.0 MEG8-261 lncRNA gastroesophageal sphincter (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 242.00 20.12 1.03 100.0 NR2F2-AS1-327 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 827.00 4.15 3.52 37.78 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 3757.00 18.86 16.00 100.0 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 735.00 3.69 3.13 47.06 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 627.00 3.15 2.67 43.12 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 10226.00 51.35 43.55 100.0 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 33635.00 37.22 143.23 96.39 SNHG26-250 lncRNA gastroesophageal sphincter (Tissue)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 48505.00 53.67 206.55 98.5 SNHG26-250 lncRNA gastroesophageal sphincter (Tissue)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 241.00 7.97 1.03 100.0 LINC02422-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 274.00 17.18 1.17 100.0 ENST00000753088 lncRNA gastroesophageal sphincter (Tissue)