ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 39084.00 81.16 166.43 95.37 ENST00000565336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 4203.00 8.73 17.90 71.94 ENST00000565336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1115.00 0.47 4.75 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 505.00 0.21 2.15 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2026.00 0.86 8.63 100.0 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 142814.00 60.27 608.14 62.66 RBMX-210 retained intron gastroesophageal sphincter (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 106.00 9.34 0.45 100.0 RPL4-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 578.00 50.93 2.46 100.0 RPL4-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 19638.15 48.44 83.62 77.24 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 9614.13 23.71 40.94 36.27 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 330.00 0.81 1.41 100.0 POLG-DT-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1122.00 40.77 4.78 100.0 ENST00000570843 lncRNA gastroesophageal sphincter (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 3163.00 83.59 13.47 100.0 MIR497HG-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 20082.00 96.68 85.51 97.68 MIR22HG-212 lncRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 566.00 2.34 2.41 70.66 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 21925.00 90.55 93.36 95.11 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 235.00 0.97 1.00 29.34 SNORD53B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 57.00 42.86 0.24 100.0 ENST00000578036 lncRNA gastroesophageal sphincter (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 624.00 89.14 2.66 100.0 RPL23A-207 protein coding gastroesophageal sphincter (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 596.00 93.42 2.54 100.0 MIR744-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 47.00 45.19 0.20 100.0 MIR378C-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 250.00 68.31 1.06 73.1 MIR142HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 436.47 0.11 1.86 62.26 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 255.51 0.06 1.09 48.12 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 322319.00 80.53 1372.52 91.05 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)