ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 747.00 91.88 3.18 100.0 MIR769-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 400.00 62.02 1.70 100.0 KRTAP19-1-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 12.00 30.00 0.05 100.0 MIR708-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 5.00 83.33 0.02 100.0 MIR509-3-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 4.00 100.00 0.02 100.0 MIR301B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 96.00 45.71 0.41 76.19 RNU1-82P-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 7101.00 33.60 30.24 79.09 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1175.00 5.56 5.00 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 412.00 1.95 1.75 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 3046.00 14.41 12.97 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 3.00 33.33 0.01 100.0 U3.17-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1484.00 92.58 6.32 100.0 SNORD17-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 97.00 58.79 0.41 100.0 SNORD72-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 1575.00 55.13 6.71 100.0 SNORD70B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 15398.00 80.48 65.57 95.29 RNY4P18-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1728.00 7.12 7.36 60.55 SNORD90-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 21591.00 88.94 91.94 100.0 SNORD90-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 35717.00 85.94 152.09 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 3068.00 7.38 13.06 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 889.00 2.14 3.79 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 287.00 0.69 1.22 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 1556.00 40.67 6.63 46.25 SNORD70-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 1087.00 2.23 4.63 100.0 B4GALNT2-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 32439.00 66.61 138.13 79.81 B4GALNT2-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 607.00 84.78 2.58 100.0 NDE1-202 protein coding gastroesophageal sphincter (Tissue)