ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 269.00 7.66 1.94 100.0 MT-RNR1-201 Mt rRNA upper lobe of left lung (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 115.00 79.31 0.83 100.0 MIR454-201 miRNA upper lobe of left lung (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 562.00 64.52 4.05 100.0 MIR501-201 miRNA upper lobe of left lung (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 1518.00 91.34 10.95 100.0 MIR769-201 miRNA upper lobe of left lung (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 84.00 69.42 0.61 100.0 KRTAP19-1-201 protein coding upper lobe of left lung (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 14.00 16.47 0.10 100.0 MIR708-201 miRNA upper lobe of left lung (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 21.00 72.41 0.15 100.0 MIR509-3-201 miRNA upper lobe of left lung (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 7.00 100.00 0.05 100.0 MIR301B-201 miRNA upper lobe of left lung (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 258.00 38.97 1.86 73.93 RNU1-82P-201 snRNA upper lobe of left lung (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 6219.00 39.15 44.84 71.81 SNORD66-201 snoRNA upper lobe of left lung (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1231.00 7.75 8.88 100.0 SNORD66-201 snoRNA upper lobe of left lung (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 565.00 3.56 4.07 100.0 SNORD66-201 snoRNA upper lobe of left lung (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 85.00 63.43 0.61 100.0 U3.17-201 snoRNA upper lobe of left lung (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 6262.00 94.54 45.15 100.0 SNORD17-201 snoRNA upper lobe of left lung (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 427.00 78.93 3.08 100.0 SNORD72-201 snoRNA upper lobe of left lung (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 1139.00 72.92 8.21 100.0 SNORD70B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 1924.00 60.31 13.87 95.06 RNY4P18-201 misc RNA upper lobe of left lung (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 7743.00 23.62 55.83 100.0 SNORD69-201 snoRNA upper lobe of left lung (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 18716.00 57.08 134.96 100.0 SNORD69-201 snoRNA upper lobe of left lung (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 2928.00 8.93 21.11 100.0 SNORD69-201 snoRNA upper lobe of left lung (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 774.00 2.36 5.58 100.0 SNORD69-201 snoRNA upper lobe of left lung (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 114.00 0.54 0.82 100.0 B4GALNT2-202 protein coding upper lobe of left lung (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 18060.00 84.86 130.23 90.95 B4GALNT2-202 protein coding upper lobe of left lung (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 704.00 86.70 5.08 100.0 NDE1-202 protein coding upper lobe of left lung (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 7.00 87.50 0.05 100.0 MIR450B-201 miRNA upper lobe of left lung (Tissue)