ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 3.00 0.10 0.01 1.03 RNA5SP370-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 12.00 5.38 0.04 100.0 SNORA31-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 84.00 2.85 0.26 100.0 RNA5SP389-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 40.00 1.36 0.12 70.18 RNA5SP389-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 25.00 0.85 0.08 25.0 RNA5SP389-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 2.00 0.07 0.01 100.0 RNA5SP389-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 990.00 6.89 3.03 76.8 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 8.00 0.06 0.02 100.0 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 67.45 0.47 0.21 46.84 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 2556.00 17.79 7.83 82.8 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 816.00 5.68 2.50 83.86 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 119.00 0.83 0.36 100.0 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 1959.00 13.64 6.00 88.56 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 603.00 4.20 1.85 37.25 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 342.24 2.38 1.05 65.94 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 383.00 2.67 1.17 58.65 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 75.05 0.52 0.23 67.61 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 302.77 2.11 0.93 41.48 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 2719.00 18.93 8.33 78.93 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 404.00 2.81 1.24 19.02 RNU5A-1-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 1066.00 88.98 3.27 100.0 SNORD114-14-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 868.00 4.22 2.66 100.0 SNORD104-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 42.00 0.20 0.13 100.0 SNORD104-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 1045.00 56.61 3.20 91.67 SNORD115-9-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 18764.00 68.14 57.51 80.04 RNA5SP358-201 rRNA pseudogene gastroesophageal sphincter (Tissue)