ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 442.00 15.89 1.35 100.0 MIR133A1HG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 4533.00 3.61 13.89 55.89 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 10609.00 8.45 32.52 49.84 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 461.00 0.37 1.41 100.0 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 71630.00 57.07 219.54 96.94 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 35263.00 28.10 108.08 98.26 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 20.00 21.74 0.06 31.75 ENST00000582320 lncRNA gastroesophageal sphincter (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 2.00 2.17 0.01 100.0 ENST00000582320 lncRNA gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 14138.00 50.18 43.33 100.0 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 4514.27 16.02 13.84 46.01 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 6113.11 21.70 18.74 53.7 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 474917.00 99.30 1455.58 99.86 SNORD43-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 18.00 0.00 0.06 100.0 SNORD43-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 76.00 35.68 0.23 100.0 MIR151B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 41.00 2.39 0.13 100.0 SNORD3A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 3086.00 77.13 9.46 100.0 SNORD92-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 4237.00 26.23 12.99 100.0 NSRP1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 9837.00 60.90 30.15 88.6 NSRP1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 224.00 2.39 0.69 100.0 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1877.00 19.99 5.75 95.28 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1361.00 14.50 4.17 63.33 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 3021.00 32.18 9.26 93.91 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1001.00 10.66 3.07 62.21 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 13.00 25.49 0.04 100.0 MIR122HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 4423.00 71.72 13.56 100.0 ODAD3-204 nonsense mediated decay gastroesophageal sphincter (Tissue)