ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 6835.00 85.08 20.95 100.0 HSPA8-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 136.00 10.09 0.42 100.0 SCARNA9-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 561.00 0.89 1.72 100.0 TAF1D-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 60892.00 96.58 186.63 100.0 TAF1D-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 4273.00 58.39 13.10 100.0 HSPA8-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 51.00 0.70 0.16 100.0 HSPA8-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 82.00 21.24 0.25 100.0 RPS2-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 472696.00 73.59 1448.78 74.67 ENST00000548801 lncRNA gastroesophageal sphincter (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 108.00 6.48 0.33 100.0 ENST00000554988 lncRNA gastroesophageal sphincter (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 147.00 8.82 0.45 100.0 ENST00000554988 lncRNA gastroesophageal sphincter (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 325.00 19.51 1.00 100.0 ENST00000554988 lncRNA gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 153.00 0.52 0.47 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 175.00 0.59 0.54 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 20995.00 71.09 64.35 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 7395.00 25.04 22.67 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 6885.00 99.72 21.10 100.0 TEKT4P2-201 transcribed unprocessed pseudogene gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 241.00 0.48 0.74 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 207.00 0.41 0.63 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 447.00 0.88 1.37 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 46988.00 92.94 144.01 97.07 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 87.00 0.44 0.27 100.0 ENST00000563103 lncRNA gastroesophageal sphincter (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 178.00 3.38 0.55 100.0 RPL4-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 4282.00 81.39 13.12 100.0 RPL4-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 4626.00 11.28 14.18 69.31 ENST00000565336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 31547.00 76.91 96.69 95.81 ENST00000565336 lncRNA gastroesophageal sphincter (Tissue)