ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 18.00 4.37 0.12 100.0 HCN2-201 protein coding sigmoid colon (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 3.00 16.67 0.02 100.0 SLC49A4-201 protein coding sigmoid colon (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 69.00 9.19 0.44 100.0 ATP5MC3-201 protein coding sigmoid colon (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 297.00 91.10 1.91 100.0 CDC25A-201 protein coding sigmoid colon (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 774.00 81.65 4.98 100.0 RUNX3-201 protein coding sigmoid colon (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 86.00 33.73 0.55 100.0 BLOC1S4-201 protein coding sigmoid colon (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 730.00 18.05 4.70 100.0 ATAD5-201 protein coding sigmoid colon (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 310.00 28.57 1.99 100.0 SLITRK5-201 protein coding sigmoid colon (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 1814.00 35.95 11.67 100.0 HASPIN-201 protein coding sigmoid colon (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 407.00 92.29 2.62 100.0 ATG101-201 protein coding sigmoid colon (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 29.00 45.31 0.19 100.0 PRICKLE1-201 protein coding sigmoid colon (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 4033.00 96.85 25.95 99.36 MIR133A2-201 miRNA sigmoid colon (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 15.00 29.41 0.10 100.0 PBLD-204 protein coding sigmoid colon (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 192299.00 81.04 1237.10 97.76 MIRLET7BHG-201 lncRNA sigmoid colon (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 27132.00 11.43 174.55 81.95 MIRLET7BHG-201 lncRNA sigmoid colon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 47.00 2.08 0.30 59.49 MIR375-201 miRNA sigmoid colon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 2210.00 97.92 14.22 99.55 MIR375-201 miRNA sigmoid colon (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 4845.00 47.29 31.17 100.0 MIR30E-201 miRNA sigmoid colon (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 4709.00 45.96 30.29 100.0 MIR30E-201 miRNA sigmoid colon (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 460.00 43.19 2.96 100.0 MIR29A-201 miRNA sigmoid colon (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 98.00 86.73 0.63 100.0 MIR345-201 miRNA sigmoid colon (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 6221.00 98.78 40.02 100.0 MIR16-2-201 miRNA sigmoid colon (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 9.00 0.51 0.06 100.0 MIR340-201 miRNA sigmoid colon (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1747.00 98.26 11.24 100.0 MIR340-201 miRNA sigmoid colon (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 702.00 55.10 4.52 100.0 MIR107-201 miRNA sigmoid colon (Tissue)