ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 504.30 2.32 3.24 54.99 RNU5A-1-201 snRNA sigmoid colon (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 1873.00 8.60 12.05 66.96 RNU5A-1-201 snRNA sigmoid colon (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 2391.00 10.98 15.38 62.41 RNU5A-1-201 snRNA sigmoid colon (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 2261.00 10.38 14.55 64.12 RNU5A-1-201 snRNA sigmoid colon (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 451.00 88.95 2.90 100.0 SNORD114-14-201 snoRNA sigmoid colon (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 29.00 0.08 0.19 100.0 SNORD104-201 snoRNA sigmoid colon (Tissue)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 1752.00 4.94 11.27 100.0 SNORD104-201 snoRNA sigmoid colon (Tissue)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 84410.00 70.98 543.03 81.7 RNA5SP358-201 rRNA pseudogene sigmoid colon (Tissue)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 91.00 0.35 0.59 77.12 RNA5SP145-201 rRNA pseudogene sigmoid colon (Tissue)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 28.00 33.73 0.18 100.0 Y_RNA.105-201 misc RNA sigmoid colon (Tissue)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 46.00 5.48 0.30 100.0 RNY4P9-201 misc RNA sigmoid colon (Tissue)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 487.00 6.23 3.13 100.0 RNU5B-1-201 snRNA sigmoid colon (Tissue)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 7.00 0.09 0.05 100.0 RNU5B-1-201 snRNA sigmoid colon (Tissue)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 2211.00 28.27 14.22 100.0 RNU5B-1-201 snRNA sigmoid colon (Tissue)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 38.00 0.49 0.24 100.0 RNU5B-1-201 snRNA sigmoid colon (Tissue)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 178.00 4.51 1.15 96.22 RNY4P27-201 misc RNA sigmoid colon (Tissue)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 15.00 0.38 0.10 68.18 RNY4P27-201 misc RNA sigmoid colon (Tissue)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 644.00 16.91 4.14 100.0 Y_RNA.136-201 misc RNA sigmoid colon (Tissue)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 4948.00 93.84 31.83 98.41 SNORD114-25-201 snoRNA sigmoid colon (Tissue)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 1764.00 93.68 11.35 100.0 SNORD113-7-201 snoRNA sigmoid colon (Tissue)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 175.00 29.76 1.13 100.0 Y_RNA.181-201 misc RNA sigmoid colon (Tissue)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 4148.47 44.84 26.69 85.06 RNY1-201 misc RNA sigmoid colon (Tissue)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 409.28 4.42 2.63 13.11 RNY1-201 misc RNA sigmoid colon (Tissue)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 267.00 2.89 1.72 100.0 RNY1-201 misc RNA sigmoid colon (Tissue)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 367.00 3.97 2.36 100.0 RNY1-201 misc RNA sigmoid colon (Tissue)