ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 9952.00 34.67 64.02 90.74 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 80.00 0.28 0.51 6.08 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 1235.00 4.30 7.95 93.92 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 874.90 19.92 5.63 73.89 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 319.00 7.26 2.05 74.19 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 317.42 7.23 2.04 28.67 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 97777.00 94.01 629.02 97.61 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 415.00 4.36 2.67 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 3687.00 26.35 23.72 65.9 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 913.00 0.15 5.87 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 1646.00 0.40 10.59 75.3 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 985.00 39.65 6.34 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 156.00 1.74 1.00 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 600865.00 98.32 3865.49 99.94 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 4177.00 26.43 26.87 79.9 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 310.00 30.88 1.99 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 23.00 0.92 0.15 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 351.00 6.59 2.26 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 7825.00 88.39 50.34 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 4174.00 96.37 26.85 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 16274.00 33.92 104.69 95.97 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 412.00 0.86 2.65 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 228.00 0.04 1.47 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 5748.00 73.65 36.98 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA sigmoid colon (Tissue)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 203.00 2.45 1.31 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA sigmoid colon (Tissue)