ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 18.00 0.01 0.12 100.0 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 5674.00 1.58 36.50 65.23 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 10.00 14.29 0.06 100.0 RPS8-207 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 361.00 41.98 2.32 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 199.00 23.14 1.28 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 39.00 4.53 0.25 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 22334.00 4.79 143.68 95.78 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4958.00 1.06 31.90 100.0 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 435331.00 93.33 2800.57 96.8 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 937.00 0.20 6.03 100.0 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 34.00 35.05 0.22 100.0 GABRE-209 retained intron sigmoid colon (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 163.00 5.79 1.05 100.0 RPL13A-212 retained intron sigmoid colon (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 184.00 6.54 1.18 100.0 RPL13A-212 retained intron sigmoid colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 114.00 4.05 0.73 100.0 RPL13A-212 retained intron sigmoid colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 238.00 21.92 1.53 100.0 RPL7A-207 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 136.00 12.52 0.87 100.0 RPL7A-207 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 181.00 90.50 1.16 100.0 RGS11-208 retained intron sigmoid colon (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 5978.00 71.88 38.46 89.8 NOP56-217 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 371.00 2.51 2.39 63.53 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 989.00 6.68 6.36 100.0 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1694.00 11.45 10.90 100.0 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 213.00 1.44 1.37 36.47 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 5857.00 39.59 37.68 85.34 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 604.00 4.08 3.89 100.0 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 2696.00 78.17 17.34 100.0 GNL3-211 retained intron sigmoid colon (Tissue)