ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 22.00 100.00 0.14 100.0 MIR301B-201 miRNA sigmoid colon (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 397.00 35.41 2.55 74.76 RNU1-82P-201 snRNA sigmoid colon (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 5815.00 32.37 37.41 78.56 SNORD66-201 snoRNA sigmoid colon (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 421.00 2.34 2.71 100.0 SNORD66-201 snoRNA sigmoid colon (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 2595.00 14.45 16.69 100.0 SNORD66-201 snoRNA sigmoid colon (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 45.00 100.00 0.29 100.0 U3.17-201 snoRNA sigmoid colon (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 3020.00 92.64 19.43 100.0 SNORD17-201 snoRNA sigmoid colon (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 262.00 80.86 1.69 100.0 SNORD72-201 snoRNA sigmoid colon (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 448.00 72.73 2.88 100.0 SNORD70B-201 snoRNA sigmoid colon (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 4776.00 50.28 30.72 86.74 RNY4P18-201 misc RNA sigmoid colon (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 2972.00 11.10 19.12 100.0 SNORD69-201 snoRNA sigmoid colon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 2797.00 10.45 17.99 100.0 SNORD69-201 snoRNA sigmoid colon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 18360.00 68.58 118.11 100.0 SNORD69-201 snoRNA sigmoid colon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 675.00 2.52 4.34 100.0 SNORD69-201 snoRNA sigmoid colon (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 52633.00 86.79 338.60 91.02 B4GALNT2-202 protein coding sigmoid colon (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 458.00 0.76 2.95 100.0 B4GALNT2-202 protein coding sigmoid colon (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 314.00 81.56 2.02 100.0 NDE1-202 protein coding sigmoid colon (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 126.00 52.50 0.81 100.0 MIR887-201 miRNA sigmoid colon (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 35.00 100.00 0.23 100.0 MIR889-201 miRNA sigmoid colon (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 22.00 84.62 0.14 100.0 MIR548K-201 miRNA sigmoid colon (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 1502.00 73.99 9.66 100.0 MIR320B2-201 miRNA sigmoid colon (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 8.00 100.00 0.05 100.0 MIR1271-201 miRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 28764.00 83.46 185.04 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1722.00 5.00 11.08 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 566.00 1.64 3.64 100.0 SNORD100-201 snoRNA sigmoid colon (Tissue)