ENCFF720JFQ

Library Details

Organism: Homo Sapiens
Biosample: mesendoderm (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR494ATA
Description: Part of ENCODE experiment ENCSR494ATA.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 58.00 1.65 0.53 82.86 ENST00000565336 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1890.00 33.97 17.36 100.0 RBMX-210 retained intron mesendoderm (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 394.00 7.08 3.62 100.0 RBMX-210 retained intron mesendoderm (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 33.00 0.59 0.30 100.0 RBMX-210 retained intron mesendoderm (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 2080.00 37.39 19.11 99.86 RBMX-210 retained intron mesendoderm (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 19.00 0.62 0.17 100.0 RPL4-214 retained intron mesendoderm (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 719.00 23.57 6.60 100.0 RPL4-214 retained intron mesendoderm (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 33.86 1.32 0.31 60.47 POLG-DT-202 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 15.16 0.59 0.14 68.91 POLG-DT-202 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 7102.00 17.45 65.23 100.0 ENST00000570843 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 824.00 73.97 7.57 100.0 MIR497HG-207 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 255463.00 99.77 2346.48 99.94 MIR22HG-212 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 79.00 4.11 0.73 81.44 SNORD53B-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 580.00 30.19 5.33 47.66 SNORD53B-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 18.00 0.94 0.17 18.56 SNORD53B-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 394.00 89.75 3.62 100.0 ENST00000578036 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 1709.00 53.41 15.70 100.0 RPL23A-207 protein coding mesendoderm (In vitro differentiated cells)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 7551.00 93.36 69.36 100.0 MIR744-201 miRNA mesendoderm (In vitro differentiated cells)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 315.00 79.75 2.89 100.0 MIR378C-201 miRNA mesendoderm (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 28.00 10.45 0.26 15.22 MIR142HG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 24.00 8.96 0.22 100.0 MIR142HG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 28.00 10.45 0.26 16.28 MIR142HG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1291.00 23.79 11.86 53.08 RPL23A-208 retained intron mesendoderm (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 7.49 0.14 0.07 44.08 RPL23A-208 retained intron mesendoderm (In vitro differentiated cells)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 14.96 0.28 0.14 62.35 RPL23A-208 retained intron mesendoderm (In vitro differentiated cells)