ENCFF714LDG

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 476.00 1.66 3.15 100.0 SNORD82-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 33.00 0.12 0.22 89.19 SNORD82-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 2655.00 9.28 17.59 100.0 SNORD82-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 4384.00 96.06 29.04 98.83 MIR146B-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 21.00 12.35 0.14 100.0 SNHG20-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 2309.00 27.19 15.30 100.0 ATP5MK-205 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 1040.00 12.25 6.89 100.0 ATP5MK-205 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 2263.00 29.93 14.99 100.0 LINC01556-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 41.00 39.05 0.27 100.0 ATAD3A-202 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 4911.00 64.63 32.53 79.02 TMC5-202 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 10984.00 96.89 72.76 100.0 ZMYM2-203 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 135.00 2.48 0.89 100.0 RNVU1-7-201 snRNA trophoblast cell (In vitro differentiated cells)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 10.00 0.75 0.07 100.0 SNORD24-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 6169.00 92.05 40.86 100.0 Y_RNA.389-201 misc RNA trophoblast cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 1784.00 28.48 11.82 100.0 SNORD101-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 211.00 3.37 1.40 96.79 SNORD101-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 1002.00 15.99 6.64 100.0 SNORD101-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 49.00 0.78 0.32 84.48 SNORD101-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 1111.00 41.53 7.36 100.0 SNORD37-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 7.00 1.27 0.05 100.0 SNORD59A-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 346.00 6.67 2.29 100.0 Y_RNA.555-201 misc RNA trophoblast cell (In vitro differentiated cells)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 98033.00 89.19 649.39 91.54 MIR25-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 64634.00 89.24 428.15 99.57 MIR99B-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 573.00 19.09 3.80 32.82 MIR23B-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 2256.00 75.17 14.94 86.3 MIR23B-201 miRNA trophoblast cell (In vitro differentiated cells)