ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 799.00 29.17 4.58 100.0 RNA5SP77-201 rRNA pseudogene stomach (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 8560.00 27.49 49.05 98.57 SNORD114-22-201 snoRNA stomach (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 22058.00 70.85 126.39 100.0 SNORD114-22-201 snoRNA stomach (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 11404.00 69.15 65.34 100.0 SNORD6-201 snoRNA stomach (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 1283.00 7.78 7.35 100.0 SNORD6-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 381.00 0.91 2.18 100.0 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 12854.00 30.77 73.65 98.45 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1941.00 4.65 11.12 100.0 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 2066.00 4.95 11.84 100.0 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 6509.00 15.58 37.30 92.04 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 8154.76 19.52 46.73 63.08 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 4660.97 11.16 26.71 36.06 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 86130.00 96.65 493.52 97.95 MIR146B-201 miRNA stomach (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 134.00 24.81 0.77 100.0 SNHG20-201 lncRNA stomach (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 221.00 12.67 1.27 100.0 ATP5MK-205 protein coding stomach (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 335.00 19.21 1.92 100.0 ATP5MK-205 protein coding stomach (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 38.00 16.31 0.22 100.0 LINC01556-201 lncRNA stomach (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 202.00 27.01 1.16 100.0 ATAD3A-202 protein coding stomach (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 87.00 8.98 0.50 20.52 TMC5-202 protein coding stomach (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 85.00 87.63 0.49 100.0 ZMYM2-203 protein coding stomach (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 167.00 5.00 0.96 100.0 RNVU1-7-201 snRNA stomach (Tissue)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 466.00 65.73 2.67 100.0 Y_RNA.389-201 misc RNA stomach (Tissue)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 149038.00 92.08 853.97 99.94 SNORD101-201 snoRNA stomach (Tissue)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 1068.00 0.66 6.12 100.0 SNORD101-201 snoRNA stomach (Tissue)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 1765.00 1.09 10.11 100.0 SNORD101-201 snoRNA stomach (Tissue)