ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 3098.00 23.02 17.75 67.01 MIR222HG-206 lncRNA stomach (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 49.00 0.36 0.28 100.0 MIR222HG-206 lncRNA stomach (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 63.00 14.42 0.36 100.0 RPSA-216 retained intron stomach (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1711.00 10.48 9.80 86.94 MIR99AHG-370 lncRNA stomach (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 13392.00 82.05 76.73 97.19 MIR99AHG-370 lncRNA stomach (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 557.00 91.76 3.19 100.0 HPS4-237 retained intron stomach (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 356.00 93.44 2.04 100.0 MEG8-253 lncRNA stomach (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 22.00 3.71 0.13 100.0 MEG9-206 lncRNA stomach (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 201.00 33.90 1.15 100.0 MEG9-206 lncRNA stomach (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1220.00 10.15 6.99 100.0 DNAJC5-203 nonsense mediated decay stomach (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 2601.00 36.32 14.90 100.0 ENST00000707189 TEC stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 283.00 0.24 1.62 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 56391.94 46.84 323.12 53.17 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 3365.00 2.80 19.28 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 644.00 0.53 3.69 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 36.00 0.03 0.21 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 211.00 0.18 1.21 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 59849.15 49.71 342.93 55.42 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 18.00 0.00 0.10 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 21066.00 5.13 120.71 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 1686.00 0.41 9.66 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 4670.00 1.14 26.76 74.26 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 378942.00 92.29 2171.30 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 41554.00 93.06 238.10 99.06 SNHG32-227 lncRNA stomach (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 1319.00 2.95 7.56 100.0 SNHG32-227 lncRNA stomach (Tissue)