ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 2.00 0.00 0.01 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 32.00 0.04 0.13 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 53848.63 64.15 219.20 69.21 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 275.00 0.33 1.12 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 122.00 0.15 0.50 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 29.00 0.03 0.12 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 65.00 0.08 0.26 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 3827.00 3.91 15.58 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 271.00 0.28 1.10 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 24.00 0.02 0.10 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 2222.00 2.27 9.04 71.7 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 89973.00 91.88 366.25 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 16909.00 92.39 68.83 98.89 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 483.00 2.64 1.97 100.0 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 40.00 0.22 0.16 100.0 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 5.00 0.03 0.02 100.0 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 1164.00 87.06 4.74 100.0 B4GALT1-203 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 844.00 10.77 3.44 100.0 ENST00000722183 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 876.00 11.18 3.57 92.21 ENST00000722183 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 186.00 2.37 0.76 100.0 ENST00000722183 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 8.00 29.63 0.03 100.0 MIR34BHG-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 12534.00 84.65 51.02 87.87 THBS3-AS1-228 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 12.00 63.16 0.05 100.0 MIR200CHG-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 968.00 23.73 3.94 100.0 SNHG16-266 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1003.00 24.59 4.08 100.0 SNHG16-266 lncRNA esophagus muscularis mucosa (Tissue)