ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 11517.00 95.33 46.88 100.0 SNORD42B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 658.00 9.81 2.68 100.0 RNY4P25-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 260.00 75.58 1.06 100.0 SNORD121A-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1530.00 17.43 6.23 75.22 SNORD126-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 6935.00 78.99 28.23 96.29 SNORD126-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 11375.00 94.43 46.30 98.17 SNORD124-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 180.00 15.18 0.73 100.0 SNHG12-201 retained intron esophagus muscularis mucosa (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 1446.00 28.63 5.89 100.0 RPL3-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 792.00 15.68 3.22 66.39 RPL3-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 4971.00 96.26 20.24 100.0 SMC1A-204 retained intron esophagus muscularis mucosa (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 142341.00 96.46 579.42 99.23 RABGGTB-208 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 709.00 11.32 2.89 100.0 DDX39B-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 214.00 3.42 0.87 100.0 DDX39B-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 3160.00 50.46 12.86 75.01 DDX39B-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1168.00 82.02 4.75 100.0 RPS8-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 362623.00 97.02 1476.11 99.6 RPL13-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 4521.00 1.21 18.40 100.0 RPL13-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2864.00 0.80 11.66 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 9826.00 2.75 40.00 43.55 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 220.00 0.06 0.90 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 22.00 0.01 0.09 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 61527.00 17.21 250.45 83.15 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 409.00 0.11 1.66 38.8 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2481.00 0.69 10.10 51.21 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1019.00 0.28 4.15 53.41 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)