ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 917.00 92.91 3.34 100.0 ENST00000630615 snoRNA sigmoid colon (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 223.00 45.79 0.81 100.0 DMRT2-209 protein coding sigmoid colon (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 82.00 16.84 0.30 100.0 DMRT2-209 protein coding sigmoid colon (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 784.00 44.88 2.85 100.0 SNORD98-201 snoRNA sigmoid colon (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 614.00 35.15 2.23 100.0 SNORD98-201 snoRNA sigmoid colon (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 67191.05 69.23 244.40 71.23 MIR106AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 68.37 0.07 0.25 32.87 MIR106AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 16.00 0.02 0.06 100.0 MIR106AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 123.54 0.13 0.45 59.39 MIR106AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 376.00 30.32 1.37 100.0 MEG8-222 lncRNA sigmoid colon (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 592.00 47.74 2.15 100.0 MEG8-222 lncRNA sigmoid colon (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 124.00 1.69 0.45 100.0 SNHG14-224 lncRNA sigmoid colon (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 1762.00 24.01 6.41 77.96 SNHG14-224 lncRNA sigmoid colon (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 881.00 12.01 3.20 59.65 SNHG14-224 lncRNA sigmoid colon (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 4205.08 9.08 15.30 47.1 5S_rRNA.20-201 rRNA pseudogene sigmoid colon (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 342.00 2.39 1.24 100.0 HSPA9-211 retained intron sigmoid colon (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 7197.00 50.24 26.18 64.84 HSPA9-211 retained intron sigmoid colon (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 7012.00 79.88 25.51 100.0 DNM3OS-205 lncRNA sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 3716.00 0.26 13.52 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 347.00 0.02 1.26 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1909.00 0.13 6.94 90.17 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 17.00 0.00 0.06 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 44.00 0.00 0.16 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 1606.00 0.11 5.84 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 818408.00 56.27 2976.86 99.79 GAS5-230 retained intron sigmoid colon (Tissue)