ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 637.00 18.35 2.32 100.0 SNORD62B-201 snoRNA sigmoid colon (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1068.00 30.77 3.88 91.83 SNORD62B-201 snoRNA sigmoid colon (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 12.00 0.35 0.04 100.0 SNORD62B-201 snoRNA sigmoid colon (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 15.00 100.00 0.05 100.0 MRPL32-203 nonsense mediated decay sigmoid colon (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 17.00 80.95 0.06 100.0 ENST00000436739 lncRNA sigmoid colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 1389.00 21.36 5.05 79.19 TMEM107-204 protein coding sigmoid colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 10.00 0.15 0.04 100.0 TMEM107-204 protein coding sigmoid colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 100.00 1.54 0.36 100.0 TMEM107-204 protein coding sigmoid colon (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2903.00 44.65 10.56 90.13 TMEM107-204 protein coding sigmoid colon (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 2265.00 87.35 8.24 100.0 SNHG16-201 lncRNA sigmoid colon (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 61766.00 84.77 224.67 95.89 SNORD105B-201 snoRNA sigmoid colon (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 417.00 30.17 1.52 45.28 SNORD121B-201 snoRNA sigmoid colon (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 7.00 0.69 0.03 100.0 SNORD127-201 snoRNA sigmoid colon (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 21.00 2.08 0.08 100.0 SNORD127-201 snoRNA sigmoid colon (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 30482.00 96.57 110.87 100.0 SNORD42B-201 snoRNA sigmoid colon (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 1000.00 10.54 3.64 100.0 RNY4P25-201 misc RNA sigmoid colon (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 429.00 74.22 1.56 100.0 SNORD121A-201 snoRNA sigmoid colon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 16.00 0.15 0.06 2.09 SNORD126-201 snoRNA sigmoid colon (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 10342.00 97.31 37.62 99.99 SNORD126-201 snoRNA sigmoid colon (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 206.00 31.21 0.75 100.0 SNHG12-201 retained intron sigmoid colon (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 4371.00 96.21 15.90 100.0 SMC1A-204 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 3.00 0.10 0.01 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 502.00 17.01 1.83 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1055.00 35.74 3.84 100.0 DDX39B-219 retained intron sigmoid colon (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2976.00 83.04 10.82 100.0 RPS8-206 protein coding CDS not defined sigmoid colon (Tissue)