ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 853.00 46.38 4.49 56.75 ENST00000827714 lncRNA transverse colon (Tissue)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 650.00 35.35 3.42 43.25 ENST00000827714 lncRNA transverse colon (Tissue)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 735.00 8.13 3.87 100.0 GAS5-377 lncRNA transverse colon (Tissue)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 30.00 0.33 0.16 100.0 GAS5-377 lncRNA transverse colon (Tissue)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 1049.00 11.61 5.52 100.0 GAS5-377 lncRNA transverse colon (Tissue)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 6578.00 72.80 34.62 100.0 GAS5-377 lncRNA transverse colon (Tissue)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 10251.00 85.60 53.96 99.76 ZFAS1-238 lncRNA transverse colon (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 106.00 0.89 0.56 100.0 ZFAS1-238 lncRNA transverse colon (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 45.00 0.38 0.24 100.0 ZFAS1-238 lncRNA transverse colon (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 486.00 4.06 2.56 100.0 ZFAS1-238 lncRNA transverse colon (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 1521.00 37.57 8.01 100.0 ZFAS1-242 lncRNA transverse colon (Tissue)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 2222.00 54.89 11.70 100.0 ZFAS1-242 lncRNA transverse colon (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 817.00 37.55 4.30 100.0 ENST00000837997 lncRNA transverse colon (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 337.00 15.49 1.77 100.0 ENST00000837997 lncRNA transverse colon (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 8411.00 78.11 44.27 83.92 ENST00000839036 lncRNA transverse colon (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 26.00 6.99 0.14 100.0 ENST00000849527 lncRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 193591.00 87.35 1019.00 97.07 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 20.00 0.01 0.11 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 50.00 0.01 0.26 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 1766.00 49.86 9.30 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 1162.00 32.81 6.12 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 139.00 15.27 0.73 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 85.00 2.44 0.45 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 2060.00 46.91 10.84 82.43 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 53.00 0.01 0.28 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA transverse colon (Tissue)