ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1375.00 79.71 7.24 85.56 MIR142HG-201 lncRNA transverse colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 37.00 2.14 0.19 9.44 MIR142HG-201 lncRNA transverse colon (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 2.00 0.04 0.01 100.0 SNORD3C-201 snoRNA transverse colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 133.02 0.05 0.70 58.86 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 98.16 0.04 0.52 52.77 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 215156.00 82.91 1132.51 89.31 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 42794.00 16.49 225.25 89.89 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 11.00 0.53 0.06 100.0 MIR133A1HG-202 lncRNA transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 867.00 1.73 4.56 52.93 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 2832.00 5.65 14.91 23.48 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 621.00 1.24 3.27 100.0 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 40517.00 80.79 213.27 97.44 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 3504.00 6.99 18.44 94.81 RPL17-211 retained intron transverse colon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 26.00 29.55 0.14 32.5 ENST00000582320 lncRNA transverse colon (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 2.00 2.27 0.01 100.0 ENST00000582320 lncRNA transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 616.00 3.89 3.24 100.0 RPL17-214 retained intron transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 8769.77 55.38 46.16 61.84 RPL17-214 retained intron transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 6373.54 40.24 33.55 43.5 RPL17-214 retained intron transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 26.00 0.02 0.14 100.0 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 114922.00 97.97 604.91 99.93 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 183.00 0.16 0.96 100.0 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 49.00 23.33 0.26 100.0 MIR151B-201 miRNA transverse colon (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 41.00 0.64 0.22 100.0 SNORD3A-201 snoRNA transverse colon (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1939.00 72.51 10.21 100.0 SNORD92-201 snoRNA transverse colon (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 4492.00 61.08 23.64 100.0 NSRP1-214 protein coding transverse colon (Tissue)