ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 402.00 0.06 2.97 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 153.00 0.02 1.13 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 2046.00 0.33 15.14 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 724.00 0.12 5.36 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 912.00 0.15 6.75 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 32905.00 5.24 243.41 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 291.00 0.05 2.15 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 2646.00 0.42 19.57 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 90188.00 14.35 667.16 87.05 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 4.00 0.00 0.03 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 2349.00 0.37 17.38 87.23 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 32.00 0.01 0.24 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 12.00 0.00 0.09 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 10381.00 1.65 76.79 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1615.00 0.26 11.95 86.92 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1589.20 0.25 11.76 36.98 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 1356.00 0.22 10.03 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 987.00 0.16 7.30 61.5 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 2246.00 0.36 16.61 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 48.00 0.01 0.36 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 4685.00 12.31 34.66 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 428.55 1.13 3.17 88.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 52.00 0.14 0.38 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 185.00 0.49 1.37 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 47.16 0.12 0.35 9.68 SNHG5-273 lncRNA upper lobe of left lung (Tissue)