ENCFF000JJT

Library Details

Organism: Homo Sapiens
Biosample: mammary epithelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVF
Description: Part of ENCODE experiment ENCSR000CVF. The libraries contained in this experiment come from mammary epithelial primary whole cells, HMEpC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning..
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 17256.00 52.39 5748.22 95.13 SNHG29-232 lncRNA mammary epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 47.00 0.14 15.66 100.0 SNHG29-232 lncRNA mammary epithelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 13.00 0.04 4.33 100.0 SNHG29-232 lncRNA mammary epithelial cell (Primary cell)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1.00 1.37 0.33 100.0 SNHG14-234 lncRNA mammary epithelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 454.00 29.29 151.23 100.0 SNHG1-248 lncRNA mammary epithelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 346.00 22.32 115.26 100.0 SNHG1-248 lncRNA mammary epithelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 173.00 11.16 57.63 100.0 SNHG1-248 lncRNA mammary epithelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 125.00 8.96 41.64 100.0 SNHG5-273 lncRNA mammary epithelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 647.00 46.38 215.52 88.51 SNHG5-273 lncRNA mammary epithelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 342.00 24.52 113.93 90.48 SNHG5-273 lncRNA mammary epithelial cell (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 155.00 54.58 51.63 100.0 SNHG14-336 lncRNA mammary epithelial cell (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1435.00 64.61 478.02 100.0 NCL-216 retained intron mammary epithelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 813.02 49.04 270.83 87.99 SNHG19-202 lncRNA mammary epithelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 146.26 8.82 48.72 35.85 SNHG19-202 lncRNA mammary epithelial cell (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 243.00 32.88 80.95 100.0 SNHG8-214 lncRNA mammary epithelial cell (Primary cell)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 1.00 0.22 0.33 100.0 ENST00000722183 lncRNA mammary epithelial cell (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 321.00 70.55 106.93 100.0 ENST00000722183 lncRNA mammary epithelial cell (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 9.00 69.23 3.00 100.0 ENST00000747512 lncRNA mammary epithelial cell (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 817.00 74.48 272.15 100.0 ENST00000772672 lncRNA mammary epithelial cell (Primary cell)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 1.00 100.00 0.33 100.0 ENST00000773843 lncRNA mammary epithelial cell (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 3.00 42.86 1.00 100.0 ENST00000788343 lncRNA mammary epithelial cell (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 12.00 5.80 4.00 30.77 ENST00000823279 lncRNA mammary epithelial cell (Primary cell)