ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 37.00 68.52 0.72 100.0 C19orf48P-218 lncRNA GM23248 (Cell line)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 2740.00 90.91 53.55 97.34 SNHG18-220 lncRNA GM23248 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 57.00 21.03 1.11 100.0 ENST00000817026 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 13.00 1.65 0.25 100.0 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 43.97 5.59 0.86 48.32 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 27.57 3.50 0.54 34.04 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 71.06 9.03 1.39 42.81 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 54.97 6.98 1.07 38.44 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 55.00 6.99 1.07 83.33 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 27.59 3.51 0.54 21.56 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 110.05 14.00 2.15 75.9 ENST00000823801 lncRNA GM23248 (Cell line)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 13.00 39.39 0.25 48.15 ENST00000827714 lncRNA GM23248 (Cell line)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 14.00 42.42 0.27 51.85 ENST00000827714 lncRNA GM23248 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 457.00 11.40 8.93 100.0 GAS5-377 lncRNA GM23248 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 4.00 0.10 0.08 100.0 GAS5-377 lncRNA GM23248 (Cell line)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 81.00 2.02 1.58 100.0 GAS5-377 lncRNA GM23248 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 3200.00 79.84 62.54 100.0 GAS5-377 lncRNA GM23248 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 59.00 36.88 1.15 100.0 TAF12-DT-204 lncRNA GM23248 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 17413.00 92.99 340.31 98.98 ZFAS1-238 lncRNA GM23248 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 41.00 0.22 0.80 100.0 ZFAS1-238 lncRNA GM23248 (Cell line)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 56.00 0.30 1.09 100.0 ZFAS1-238 lncRNA GM23248 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 214.00 1.14 4.18 100.0 ZFAS1-238 lncRNA GM23248 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 939.00 31.38 18.35 100.0 ZFAS1-242 lncRNA GM23248 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 1691.00 56.52 33.05 100.0 ZFAS1-242 lncRNA GM23248 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 40.00 24.39 0.78 100.0 ENST00000837997 lncRNA GM23248 (Cell line)